PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr024319.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 508aa    MW: 56827.6 Da    PI: 5.2365
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr024319.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.52.1e-1061265063374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  e Lle A+a+++++ +++q+l++ l+el sp+gd+ q+la+yf++AL +r+++s++++y++l + ++++ + +++ +++  f+evsP+ +f+h+++N 
  Pbr024319.1 126 EILLETARAIADKNSSRVQQLMWMLNELGSPYGDTDQKLASYFLQALFSRMTDSGDRCYRTLISASEKTCSFESTRKMVLKFQEVSPWTTFGHVACNG 223
                  579**********************************************************96655554444444444455***************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvak.rledle 190
                  aI+ea++ge ++HiiD++ ++++QWp+Ll+aLa+R++++p+lR+T+v++++++        ++ ++e+g r++kfA+ +gvpf+fn+++++ +l++l+
  Pbr024319.1 224 AIMEAFDGEPKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVANRANdgsggaaAQKVMKEIGARMEKFARLMGVPFKFNAIHHSgDLSELN 321
                  ***********************************************9988778999*99999*************************8888****** PP

         GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerik 284
                  l+eL+++ +Eala+n++  lh++     s+ ++rd ++++++sl+P+++++ve+ead++ +    +F+++f e+l+++ + f++l+++++r+s+er +
  Pbr024319.1 322 LSELDIRDDEALAINCIGTLHSVQ----SVGNRRDYLVSAFRSLRPRIITLVEEEADLDVGvdgfDFVHGFQECLRWFRVYFEALDESFSRTSNERLM 415
                  ***********************7....888899*********************99865556669******************************** PP

         GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                  +Er+  gr++v++vac+ +e++er+et+ +W++r++ aGF+p+ +s+++ +++++llr++k +g+ +    ++ + ++l Wkd+p+v++SaWr
  Pbr024319.1 416 LERA-AGRAVVDLVACAPSESVERRETATRWSRRMHVAGFSPALFSDEVCDDVRALLRRYK-EGWAMTqctDSIAGIFLSWKDQPVVWASAWR 506
                  ****.********************************************************.6655542324556677**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.8298484IPR005202Transcription factor GRAS
PfamPF035147.4E-104126506IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDTLFRLVSL QSDHQQSFNN STTSKTSTPT TTTTTSSSSR SSFLSNPPHP NYPHQNDDAG  60
EECFNFFMDE EDFSSSSSKH YFPSNHPTPP TPNPLPTATT TPTPADFSFS PSLVNFELSN  120
GKWAPEILLE TARAIADKNS SRVQQLMWML NELGSPYGDT DQKLASYFLQ ALFSRMTDSG  180
DRCYRTLISA SEKTCSFEST RKMVLKFQEV SPWTTFGHVA CNGAIMEAFD GEPKLHIIDI  240
SNTYCTQWPT LLEALATRTD ETPHLRLTTV VANRANDGSG GAAAQKVMKE IGARMEKFAR  300
LMGVPFKFNA IHHSGDLSEL NLSELDIRDD EALAINCIGT LHSVQSVGNR RDYLVSAFRS  360
LRPRIITLVE EEADLDVGVD GFDFVHGFQE CLRWFRVYFE ALDESFSRTS NERLMLERAA  420
GRAVVDLVAC APSESVERRE TATRWSRRMH VAGFSPALFS DEVCDDVRAL LRRYKEGWAM  480
TQCTDSIAGI FLSWKDQPVV WASAWRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-3315850637375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354622.10.0PREDICTED: protein SHORT-ROOT-like
SwissprotQ9SZF70.0SHR_ARATH; Protein SHORT-ROOT
TrEMBLM5VXS80.0M5VXS8_PRUPE; Uncharacterized protein
STRINGVIT_07s0129g00030.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129734106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein